Molecular Docking | Virtual Screening | Molecular Dynamics Simulation | Binding Free Energy Calculation — Advancing Drug Discovery and Protein Interaction Research
Target–Ligand Binding Mode Prediction · Large-Scale Compound Screening · Complex Stability Assessment · Energetic Analysis
Reference Examples
Use these formats when describing your requirements below.
✅ Example 1: Perform molecular docking between human protein A (UniProt ID: P12345) and human protein B (UniProt ID: Q67890) to identify potential interaction interfaces and key residues.
✅ Example 2: Analyze the binding mode of small molecule A (PubChem CID: 2244) with mouse protein B (UniProt ID: P12345), predict the binding pocket and key residues, and calculate the binding free energy.
✅ Example 3: Use molecular dynamics simulation to assess the binding stability of protein A (UniProt ID: Q8xxxx) and protein B (UniProt ID: P6xxxx), with a simulation time of at least 100 ns.
✅ Example 4: Virtually screen candidate small molecules that can bind to protein A (UniProt ID: P00533), including drug-likeness filtering.